You’ll be making these mini caramel apple cheesecakes all autumn long! With graham cracker crust, cinnamon cheesecake filling, homemade salted caramel sauce, and spiced apple pie topping, these little treats are beyond decadent. And, everyone gets their own little cheesecake for easy serving. So cute!

Tan plates of mini caramel apple cheesecakes on a wood table next to red apples and leaves.

It’s the first week of straight 70-something degree weather in Reno and bless it. I mean, how unfair that the grocery stores are filled with cinnamon-scented broomsticks and pumpkins when it’s still lake weather? Absolutely uncouth.

So now that I’m feeling a little cozier and a little less overheated, it just feels right to turn on the oven and whip up a batch of apple pie spice. Because it’s apple season and that means I am in the prime mood for flaky apple hand pies and juicy mini apple crumbles. And now that Halloween is right around the corner? You guessed it. Caramel apple everything.

For the longest time, I thought I didn’t like cheesecake but it turns out that I was just eating a lot of bad ones. I mean, as a trained pastry chef, I’ve had many good and much more bad cheesecakes. But after working on my recipe for years and years, I totally get the hype.

These minis are the perfect cheesecake situation. And this autumn version is everything I love about the season. Apples! Caramel! Warm spices! I could eat these every day.

Use the right apples

White and brown bowls of cinnamon, sugar, caramel, sour cream, eggs, brown sugar, salt, and graham crackers on a tan counter next to cream cheese and apples.

Choosing the right apples makes a big difference. Looking for sweet-tart baking apples like Honeycrisp, gala, Granny Smith, or Pink Lady. You’ll also need graham crackers, sugar, and unsalted butter for crust. To make the filling, grab full-fat cream cheese, sour cream, cinnamon, apple pie spice, vanilla, eggs, brown sugar, Kosher salt, and either store-bought or homemade caramel sauce.

Cheesecake pan

A mini cheesecake pan on a tan counter.

If you make individual cheesecakes a lot, it’s totally worth investing in a mini cheesecakes pan. I got mine at Williams Sonoma but you can also find a pan on Amazon. The removable bottoms make it so much easier to get the cheesecakes out!

If you don’t want to buy anything, it’s totally ok. A standard cupcake pan will work great in this recipe. You’ll just want to use cupcake liners so you can get the cheesecakes out of the pan!

How to make caramel sauce

If you can’t find a good caramel sauce, don’t sweat it. Homemade is surprisingly easy!

A pot of sugar on a tan counter.
Melt the sugar in a saucepan over medium heat.
A pot of half melted sugar on a tan counter.
The sugar will clump up at first but just be patient.
A pot of melted sugar on a tan counter.
After a few minutes, the sugar will be melted & caramelized!
A pot with caramel and butter on a tan counter.
Add the butter.
A hand pouring a cup of cream into a pot of caramel sauce.
Stir in the cream.
A hand sprinkling a teaspoon of salt into a pot of caramel sauce.
Add the salt & vanilla.

When you add the butter to the hot sugar, the caramel is going to bubble and splatter. That’s totally normal! Just keep stirring until the butter is melted.

Graham cracker crust

Graham crackers in a food processor on a tan counter.
Blend the graham crackers into fine crumbs.
A white bowl pouring butter into a food processor with graham cracker crumbs.
Add sugar, melted, butter, and a pinch of salt.
A food processor with graham cracker crust on a tan counter.
The mixture should look like this – almost like a dough!

No food processor? You can also place the graham crackers in a zipper bag and use a rolling pin to crush them into fine crumbs. Then, mix the crust together by hand.

A hand spooning graham cracker crust into mini cheesecake pans.
Spoon the crust into the pans.
A hand pressing graham cracker crust into individual pans.
Press the crust into the cups.
Baked mini pans of graham cracker crust.
Bake until golden-brown.

Cream cheese filling & bake

A silver bowl with sugar, butter, and a mixing paddle.
Cream the butter & sugar.
A silver bowl with butter, sugar, & cream cheese.
Add the cream cheese.
A silver bowl with mixed cream cheese filling and a mixing paddle.
Mix until creamy.
A silver bowl with cream cheese, sour cream, cinnamon, and vanilla.
Add the sour cream, cinnamon, & vanilla extract.
A silver bowl with caramel apple cheesecakes filling and eggs.
Add the eggs to the cream cheese filling.
Mini caramel apple cheesecakes filling in a silver bowl.
Mix just until it’s smooth & creamy.

Don’t over-mix the eggs into cheesecake filling or it will come out dense and crumbly. You want to mix everything together just until there are no more streaks of egg!

A scoop dividing mini apple caramel cheesecakes batter into pans.
Divide the batter between the cups & smooth them out with a butter knife.
A hand using a knife to smooth cheesecake filling into mini pans.
Lastly, bake the cheesecakes at 325°F (163°C) for 18-20 minutes.

Apple pie topping

A white pan with melted butter.
Melt the butter in a large saucepan.
A white pan with melted butter, apples, brown sugar, & spices to top caramel apple cheesecakes.
Add the apples, brown sugar, & apple pie spice.
A hand stirring apple pie filling for caramel apple cheesecakes with a wood spoon.
Cook until the apples are softened.

Assemble and enjoy!

A hand spooning caramel on top of a pan of mini caramel apple cheesecakes.
Top the cheesecakes with caramel.
A hand spooning apples over a pan of mini caramel apple cheesecakes.
Spoon the apple topping over the cakes.
A mini caramel apple cheesecake with with a bite taken out on a tan plate next to another cheesecake. The plate is on a wood table next to apples, another tan plate of cheesecakes, and a beige linen.

My favorite water bath hack

A lot of mini cheesecake recipes don’t use a water bath, but I always do just to make sure the filling comes out as creamy as possible! But, you don’t even have to use a traditional water bath. Instead, fill a cake pan with water and place it on the rack under the cheesecake pan. The heat from the oven will create steam which will make for super creamy, silky cheesecakes!

Storing & make-ahead tips

The cheesecakes taste best with warm apple topping so I like to assemble them right before serving. Just place the cheesecakes in an airtight container and refrigerate for up to 3 days. You can also make the apple pie topping in advance and store it in the fridge.

A white plate with a mini caramel apple cheesecake on a wood counter next to a beige plate of cheesecakes and apples.

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The Best Mini Caramel Apple Cheesecakes

Yield: 12 mini cheesecakes
Prep Time: 30 minutes
Cook Time: 40 minutes
Total Time: 1 hour 10 minutes
You'll be making these mini caramel apple cheesecakes all autumn long! With graham cracker crust, cinnamon cheesecake filling, homemade salted caramel sauce, and spiced apple pie topping, these little treats are beyond decadent. And, everyone gets their own little cheesecake for easy serving. So cute!

Ingredients

Salted Caramel Sauce

  • 200 grams sugar (1 cup)
  • 86 grams unsalted butter, softened (6 Tablespoons)
  • 120 milliliters heavy whipping cream, room temperature (1/2 cup)
  • 1 teaspoon vanilla extract
  • 1/2 teaspoon Kosher salt, plus more to taste

Graham Cracker Crust

  • 10 full graham cracker sheets
  • 50 grams sugar (1/4 cup)
  • 86 grams unsalted butter, melted (6 Tablespoons)
  • Pinch of Kosher salt

Cinnamon Cheesecake Filling

  • 28 grams unsalted butter, softened (2 Tablespoons)
  • 132 grams sugar (2/3 cup)
  • 454 grams full-fat cream cheese, softened (16 ounces)
  • 152 grams full-fat sour cream, room temperature (2/3 cup)
  • 1 teaspoon cinnamon
  • 1 Tablespoon vanilla extract
  • 2 eggs, room temperature

Apple Pie Topping

  • 454 grams Honeycrisp apples (1 pound)
  • 14 grams unsalted butter (1 Tablespoon)
  • 52 grams brown sugar (1/4 cup, packed)
  • 1 teaspoon apple pie spice
  • Pinch of Kosher salt

Equipment

  • Mini cheesecake pan or a standard cupcake pan
  • Stand mixer or hand mixer

Instructions 

Salted Caramel Sauce

  • Pour the sugar into a heavy-bottom sauce pan. Cook over medium-low heat, stirring often. At first, the sugar will clump up but after a few minutes, it will melt completely and turn a deep amber color. Keep a close eye so it doesn't burn.
  • Once the sugar is melted, remove the pot from the heat. Immediately whisk in the butter until the mixture is smooth. Work carefully, because the caramel will bubble up and splatter. Add the heavy whipping cream, vanilla extract, and the Kosher salt. Stir quickly until the caramel is silky and smooth. Taste and add more Kosher salt if desired. Pour the caramel into a bowl and let it cool.

Graham Cracker Crust

  • Preheat the oven to 325°F (163°C). Lightly grease a mini cheesecake pan with butter or baking spray. Or, you can use a standard cupcake pan. Line the cupcake pan with paper cups for easy removal. (See the Recipe Notes for more details on using a standard cupcake pan.)
  • Add the graham cracker sheets to the bowl of a food processor and pulse until you have semi-fine crumbs. You should end up with about 1 1/2 cups of crumbs (148 grams). Add the sugar, melted butter, and a big pinch of salt. Pulse the mixture until the graham crackers are finely ground and you have a thick dough.
  • Evenly divide the graham cracker mixture into the mini cheesecake cups, about 2 Tablespoons per cup (or 1 1/2 Tablespoons per cupcake liner). Using a spoon or clean fingers, press the mixture evenly into the bottom of the cups. Bake for 5-6 minutes, until the crusts are toasty and light golden-brown. Let the crusts cool while you prepare the filling.

Cinnamon Cheesecake Filling

  • Fill a cake pan (or another oven-safe pan) with a few inches of water. Set aside.
  • Pour the butter and sugar into a large mixing bowl. Using a hand mixer or stand mixer, beat the butter and sugar together until the mixture is sandy. Add the cream cheese and beat until the cream cheese is light and fluffy.
  • Add the sour cream, cinnamon, and vanilla extract. Then, add the eggs and beat just until the filling is mixed together. Using a #60 cookie scoop, evenly divide the filling between the cooled crusts. Use a butter knife to smooth the filling over the crusts.
  • Place the mini cheesecake pan (or cupcake pan) on the middle rack of the oven and set the pan of water on the rack under the mini cheesecakes. Bake at 325°F (163°C) for 17-20 minutes, or until the edges are set and the centers are still a bit jiggly like Jell-O!
  • Once the cheesecakes are baked, turn off the oven and crack the oven door. Let the mini cheesecakes cool for 1 hour in the oven. (This will keep the tops of the cheesecakes from cracking.) Then, cover the pan and refrigerate the cheesecakes for about 2-4 hours or until the filling is completely set.

Apple Pie Topping

  • Peel and core the apples. Then, dice them into small cubes (about 1/2-inch).
  • Melt the butter in a large skillet over medium heat. Add the diced apples, brown sugar, apple pie spice, and a pinch of salt. Sauté the apples until the apples are tender and the sugar is bubbling, about 6-7 minutes. Use the topping right away or store & refrigerate it for later.

Assemble the Cheesecakes

  • Right before serving, carefully remove each mini cheesecake from the pan. Use a thin butter knife to carefully cut the cheesecakes away from the sides of the pan if needed.
  • Then, top each chilled cheesecake with about 1 Tablespoon of caramel sauce followed by about 1 1/2 Tablespoons of warm apple pie topping. Serve the cheesecakes immediately. Enjoy!

Notes

Feel free to skip a step and use store-bought caramel sauce instead. I do this all the time.
If the caramel sauce breaks and separates, don’t panic! Just set the caramel back on the stove over low heat. Stir constantly until the caramel smooths out. It could take up to 10 minutes so just be patient!
No food processor? You can also place the graham crackers in a zipper bag and use a rolling pin to crush them into fine crumbs. Then, mix the crust together by hand.
It’s important that all of the ingredients are room temperature when you mix the filling together. This will help the filling come out silky and creamy.
Don’t over-mix the eggs into cheesecake filling or it will come out dense and crumbly. You want to mix everything together just until there are no more streaks of egg!
If you’re using a cupcake pan instead of a mini cheesecake pan, you may end up with closer to 18 cheesecakes. Start checking for doneness around 16 minutes.
I think the cheesecakes taste best when they’re room temperature. Just take them out of the fridge about about 20-30 minutes before assembling.
For 6 servings, you can totally halve the recipe. Or double it for a crowd!
Cuisine: American
Course: Dessert
Serving: 1mini cheesecake, Calories: 487kcal, Carbohydrates: 60.9g, Protein: 5.9g, Fat: 26.5g, Saturated Fat: 15.9g, Cholesterol: 101mg, Sodium: 400mg, Potassium: 172mg, Fiber: 1.6g, Sugar: 26.2g, Calcium: 85mg, Iron: 1mg
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